R stuck during S3 registration check
This worked for me to apparently fix my system:
Start with a newly rebooted system.
Uninstall XQuartz by dragging it to the trash.
Look in /Library/LaunchAgents/ for filenames related to xquartz. Delete them.
Look in /Library/LaunchDaemons/ for similar files. Delete them.
Reboot the system again, and install XQuartz again.
Relogin, and things seem fine.
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Sometimes, just reinstalling XQuartz is sufficient.
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