Install treemix in ubuntu 20.04
Informations are available here https://bitbucket.org/nygcresearch/treemix/downloads/
In terminal, enter for Ubuntu 20.04:
wget https://bitbucket.org/nygcresearch/treemix/downloads/treemix-1.13.tar.gz
tar -xvf treemix-1.13.tar.gz
sudo apt-get install libgsl-dev
sudo apt install libboost-dev
sudo apt install libboost-all-dev
cd treemix-1.13/
./configure
make
sudo make install
And it works:
$ treemix
TreeMix v. 1.13
$Revision: 231 $
Options:
-h display this help
-i [file name] input file
-o [stem] output stem (will be [stem].treeout.gz, [stem].cov.gz, [stem].modelcov.gz)
-k [int] number of SNPs per block for estimation of covariance matrix (1)
-global Do a round of global rearrangements after adding all populations
-tf [file name] Read the tree topology from a file, rather than estimating it
-m [int] number of migration edges to add (0)
-root [string] comma-delimited list of populations to set on one side of the root (for migration)
-g [vertices file name] [edges file name] read the graph from a previous TreeMix run
-se Calculate standard errors of migration weights (computationally expensive)
-micro microsatellite data
-bootstrap Perform a single bootstrap replicate
-cor_mig [file] list of known migration events to include (also use -climb)
-noss Turn off sample size correction
-seed [int] Set the seed for random number generation
-n_warn [int] Display first N warnings
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